1.       E.A. Feingold, P.J. Good, M. Guyer, S. Kamholz, L. Liefer, K. Wetterstrand, F.S. Collins, T.R. Gingeras, D. Kampa, E.A. Sekinger, J. Cheng, H. Hirsch, S. Ghosh, Z. Zhu, S. Patel, A. Piccolboni, A. Weissman SM et al. The ENCODE (ENCyclopedia of DNA Elements) Project.  Science (accepted)

 

2.     Pervasive lineage specific patterns of transcription in hematopoietic cells. Yuval Kluger*, Zheng Lian§, Zhang, X.**, Peter E. Newburger**, Sherman M. Weissman§  Bioassay  (in press)

 

3:

Lian Z, Euskirchen G, Rinn J, Martone R, Bertone P, Hartman S, Royce T, Nelson K, Sayward F, Luscombe N, Yang J, Li JL, Miller P, Urban AE, Gerstein M, Weissman S, Snyder M.

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Identification of novel functional elements in the human genome.
Cold Spring Harb Symp Quant Biol. 2003;68:317-22. No abstract available.
PMID: 15338632 [PubMed - in process]

 

 

4:

Kluger Y, Tuck DP, Chang JT, Nakayama Y, Poddar R, Kohya N, Lian Z, Ben Nasr A, Halaban HR, Krause DS, Zhang X, Newburger PE, Weissman SM.

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Lineage specificity of gene expression patterns.
Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6508-13. Epub 2004 Apr 19.
PMID: 15096607 [PubMed - in process]

 

 

5:

Zhang X, Kluger Y, Nakayama Y, Poddar R, Whitney C, DeTora A, Weissman SM, Newburger PE.

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Gene expression in mature neutrophils: early responses to inflammatory stimuli.
J Leukoc Biol. 2004 Feb;75(2):358-72. Epub 2003 Nov 21.
PMID: 14634056 [PubMed - indexed for MEDLINE]

 

6:

Euskirchen G, Royce TE, Bertone P, Martone R, Rinn JL, Nelson FK, Sayward F, Luscombe NM, Miller P, Gerstein M, Weissman S, Snyder M.

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CREB binds to multiple loci on human chromosome 22.
Mol Cell Biol. 2004 May;24(9):3804-14.
PMID: 15082775 [PubMed - in process]

 

7:

Martone R, Euskirchen G, Bertone P, Hartman S, Royce TE, Luscombe NM, Rinn JL, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M.

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Distribution of NF-kappaB-binding sites across human chromosome 22.
Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12247-52. Epub 2003 Oct 03.
PMID: 14527995 [PubMed - indexed for MEDLINE]

 

8:

Tsukahara Y, Lian Z, Zhang X, Whitney C, Kluger Y, Tuck D, Yamaga S, Nakayama Y, Weissman SM, Newburger PE.

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Gene expression in human neutrophils during activation and priming by bacterial lipopolysaccharide.
J Cell Biochem. 2003 Jul 1;89(4):848-61. Erratum in: J Cell Biochem. 2003 Aug 15;89(6):1302.
PMID: 12858349 [PubMed - indexed for MEDLINE]

 

9:

Lambert JF, Liu M, Colvin GA, Dooner M, McAuliffe CI, Becker PS, Forget BG, Weissman SM, Quesenberry PJ.

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Marrow stem cells shift gene expression and engraftment phenotype with cell cycle transit.
J Exp Med. 2003 Jun 2;197(11):1563-72.
PMID: 12782718 [PubMed - indexed for MEDLINE]

 

10:

Rinn JL, Euskirchen G, Bertone P, Martone R, Luscombe NM, Hartman S, Harrison PM, Nelson FK, Miller P, Gerstein M, Weissman S, Snyder M.

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The transcriptional activity of human Chromosome 22.
Genes Dev. 2003 Feb 15;17(4):529-40.
PMID: 12600945 [PubMed - indexed for MEDLINE]

 

 11:

Lian Z, Kluger Y, Greenbaum DS, Tuck D, Gerstein M, Berliner N, Weissman SM, Newburger PE.

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Genomic and proteomic analysis of the myeloid differentiation program: global analysis of gene expression during induced    differentiation in the MPRO cell line. Blood. 2002 Nov 1;100(9):3209-20. PMID: 12384419 [PubMed - indexed for MEDLINE]

 

12:

Pan X, Weissman SM.

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An approach for global scanning of single nucleotide variations.
Proc Natl Acad Sci U S A. 2002 Jul 9;99(14):9346-51.
PMID: 12093903 [PubMed - indexed for MEDLINE]

13:

Yang Y, Chen Y, Zhang C, Huang H, Weissman SM.

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Nucleolar localization of hTERT protein is associated with telomerase function.
Exp Cell Res. 2002 Jul 15;277(2):201-9.
PMID: 12083802 [PubMed - indexed for MEDLINE]

14:

Okada M, Yamaga S, Yasuda S, Weissman SM, Yasukochi Y.

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Differential display of protein tyrosine kinase cDNAs from human fetal and adult brains.
Biotechniques. 2002 Apr;32(4):856, 858, 860, 863-5.
PMID: 11962607 [PubMed - indexed for MEDLINE]

15:

Horak CE, Mahajan MC, Luscombe NM, Gerstein M, Weissman SM, Snyder M.

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GATA-1 binding sites mapped in the beta-globin locus by using mammalian chIp-chip analysis.
Proc Natl Acad Sci U S A. 2002 Mar 5;99(5):2924-9.
PMID: 11867748 [PubMed - indexed for MEDLINE]

16:

Mahajan MC, Weissman SM.

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DNA-dependent adenosine triphosphatase (helicaselike transcription factor) activates beta-globin transcription in K562 cells.
Blood. 2002 Jan 1;99(1):348-56.
PMID: 11756191 [PubMed - indexed for MEDLINE]

17:

Weissman SM.

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Discussion.
J Am Acad Psychoanal. 1992 Winter;20(4):659-64. No abstract available.
PMID: 11643049 [PubMed - indexed for MEDLINE]

18:

Gruen JR, Weissman SM.

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Human MHC class III and IV genes and disease associations.
Front Biosci. 2001 Aug 1;6:D960-72. Review.
PMID: 11487469 [PubMed - indexed for MEDLINE]

19:

Raghunathan A, Sivakamasundari R, Wolenski J, Poddar R, Weissman SM.

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Functional analysis of B144/LST1: a gene in the tumor necrosis factor cluster that induces formation of long filopodia in eukaryotic cells.
Exp Cell Res. 2001 Aug 15;268(2):230-44.
PMID: 11478849 [PubMed - indexed for MEDLINE]

20:

Lian Z, Wang L, Yamaga S, Bonds W, Beazer-Barclay Y, Kluger Y, Gerstein M, Newburger PE, Berliner N, Weissman SM.

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Genomic and proteomic analysis of the myeloid differentiation program.
Blood. 2001 Aug 1;98(3):513-24.
PMID: 11468144 [PubMed - indexed for MEDLINE]

21:

Nakayama Y, Weissman SM, Bothwell AL.

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BXMAS1 identifies a cluster of homologous genes differentially expressed in B cells.
Biochem Biophys Res Commun. 2001 Jul 20;285(3):830-7.
PMID: 11453668 [PubMed - indexed for MEDLINE]

22:

Degar BA, Baskaran N, Hulspas R, Quesenberry PJ, Weissman SM, Forget BG.

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The homeodomain gene Pitx2 is expressed in primitive hematopoietic stem/progenitor cells but not in their differentiated progeny.
Exp Hematol. 2001 Jul;29(7):894-902.
PMID: 11438212 [PubMed - indexed for MEDLINE]

23:

Subrahmanyam YV, Yamaga S, Prashar Y, Lee HH, Hoe NP, Kluger Y, Gerstein M, Goguen JD, Newburger PE, Weissman SM.

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RNA expression patterns change dramatically in human neutrophils exposed to bacteria.
Blood. 2001 Apr 15;97(8):2457-68.
PMID: 11290611 [PubMed - indexed for MEDLINE]

24:

Szekely AM, Chen YH, Zhang C, Oshima J, Weissman SM.

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Werner protein recruits DNA polymerase delta to the nucleolus.
Proc Natl Acad Sci U S A. 2000 Oct 10;97(21):11365-70.
PMID: 11027336 [PubMed - indexed for MEDLINE]

25:

Yu X, Weissman SM.

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Characterization of the promoter of human leukocyte-specific transcript 1. A small gene with a complex pattern of alternative transcripts.
J Biol Chem. 2000 Nov 3;275(44):34597-608.
PMID: 10944527 [PubMed - indexed for MEDLINE]

26:

Sivakamasundari R, Raghunathan A, Zhang CY, Chowdhury RR, Weissman SM.

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