Genotypes of Global
Populations
Project Data Download
References for Data (under
construction)
Download Data
Files by Populations (under construction)
Descriptions of Files
The following description
applies to each of the separate files. The population name is the file name.
Description: The file is tab-delimited, and thus the columns will not be aligned as
well as the sample shown below if the file is opened in a regular text editor
such as MS NotePad. However, if the file is opened in MS Excel and the Text to
Columns function is applied, it should look as shown below.
|
rs# |
chrom |
posNCBI36.1 |
GM02822 |
GM03190 |
GM03382 |
GM03725 |
GM05052 |
GM05817 |
GM06052 |
|
|
|
|
|
|
|
|
|
|
|
|
rs3782735 |
12 |
6755336 |
AG |
AA |
AA |
AA |
AA |
AA |
AA |
|
rs10774447 |
12 |
6764709 |
CT |
CT |
TT |
TT |
CT |
CT |
CT |
|
rs2855534 |
12 |
6768781 |
NN |
NN |
NN |
NN |
NN |
NN |
NN |
|
rs2857234 |
12 |
6775441 |
CT |
CC |
CC |
CT |
TT |
CT |
CT |
|
rs2707209 |
12 |
6775524 |
CT |
TT |
CT |
CT |
CC |
CT |
CT |
|
rs4646985 |
12 |
6777644 |
NN |
NN |
NN |
NN |
NN |
NN |
NN |
|
rs2255301 |
12 |
6779702 |
CC |
TT |
CT |
CC |
CC |
CT |
CC |
|
rs7299900 |
12 |
6788092 |
AG |
GG |
GG |
GG |
NN |
GG |
AG |
|
rs3213427 |
12 |
6799007 |
CT |
CT |
CT |
TT |
CT |
CT |
TT |
|
rs2071081 |
12 |
6805891 |
NN |
NN |
NN |
NN |
NN |
NN |
NN |
|
rs9606186 |
22 |
18300358 |
GG |
CC |
GC |
CC |
CC |
CC |
CC |
Row:
a) Row 1: header line,
defining contents for each column,
c) Row 2 - end: data lines,
containing site information and genotypes for individuals.
Column:
a) Column 1: dbSNP number, a
standard reference for the molecular definition.
b) Column 2: chromosome
number.
c) Column 3: physical
location on chromosome measured in base pair from the tip of the short arm, per
NCBI build 36.1
d) Column 4 - end: the genotyping information for
each individual indicated by the ID symbol in row 1 for that column.
Genotypes are
given using nucleotide symbols (A, T, C, G) where known. “NN” stands for missing data.
References for Data (under construction)
Additional information on
each polymorphism, including references can be found in ALFRED
using the rs# to search for the site and following appropriate links. Links to the population and sample
descriptions and references are associated with the data in ALFRED.
Information of human
population samples can be found here.
Genotype data for some populations cannot be released publicly.
Download Data Files by Populations (under
construction)
Bulk Download of All Data
To download the data as a
compressed file, which when expanded will contain 40 individual population
files,
each containing data on 437 markers for that population, click here.
To download the data as a
compressed file, which when expanded will contain 2 files, chr.1-9 and
chr.10-22,
in an inverted
format (individual samples by row; individual markers by column, with extra
columns denoting population source), click here.
