Now, the lab is in the midst of some 'functional genomics' questions:
1. Was it TP53's role in apoptosis or cell cycle arrest that contributed to the tumor? The phenotype of each skin tumor's TP53 mutation constitutes a "phenotypic signature" that may reveal the answer decades after the event.
2. What are the other genes involved in UV-induced apoptosis? So far, there seem to be two pathways, with different requirements for genes like ARF and BAX. Apoptosis is signaled by UV photoproducts in actively transcribed genes.
3. How does a single mutant cell expand into a clone? Our model is that apoptosis of stem cells after UV allows an adjacent TP53-mutant cell to encroach into the vacated stem cell compartments. We find that TP53-mutant cells expand by colonization, rather than by continuous invasion: clones come in multiples of 12 cells, the size of a morphological stem cell compartment.
4. We find that redox-altering antioxidants upregulate TP53 protein, thereby inducing apoptosis in transformed cells but not normal ones; this specificity suggests a potentially useful cancer prevention strategy. TP53 seems to be detecting alterations in the p16-RB-E2F1-MYC axis, but how?

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